Colab Search API

The Colab Search api runs the MSA generation tool developed by the team at ColabFold on a private server. MSA generation is required step for many ai protein structure prediction tools such as AlphaFold2, OpenFold, RosettaFold, and Boltz. In many cases these MSA files can be precomputed using this tool and then used as input to those other tools. More information can be found on the ColabFold github page

Examples

Generate the MSA for input.fasta:

lev engine submit colab-search input.fasta

Inputs

FASTA file containing query sequence of interest.

Options

• --fasta-file
  • Input FASTA file with query sequence

Outputs

This API generates a single output file labeled 0.a3m. Which is your MSA in a3m format.