Molprobity API
The Molprobity API takes as input a PDB file and runs MolProbity with the default settings, returning an HTML report. This tool is useful for identifying issues with atomic detail level models (See Notes for more information).
Examples
To submit a job:
lev engine submit molprobity input.pdb
Inputs
--pdb-file- Input PDB to evaluate in MolProbity
Outputs
- 1report.tgz1
- HTML MolProbity report
Notes
- MolProbity is a structure-validation web service that diagnoses and evaluates model quality at global and local levels
- Analyses performed by MolProbity include:
- Addition of H atoms
- All-atom contact analysis
- Torsion-angle combinations
- Covalent-geometry analyses
- Nucleic acid analyses
- Provides an overall MolProbity score based on a combination of the analyses conducted listed above.
- Analyses performed by MolProbity include:
- See References for additional resources and information on MolProbity
References
MolProbity: all-atom structure validation for macromolecular crystallography