Make Fragments API

The make fragments API generates Rosetta fragment libraries based on an input sequence.

Examples

lev engine submit make-fragments --sequence SECVENGGFCPDPEKMGDWCCGRCIRNECRNG

Inputs

• --sequence (str)
  • Input sequence to generate fragment libraries for

Outputs

• 3mers.tgz
  • library of 3mer fragments
• 9mers.tgz
  • library of 9mer fragments
• pssm.tgz
  • PSSM produced during fragment generation
• sequence-profile.tgz
  • BLAST .chk checkpoint file produced during fragment generation