Make Fragments API
The make fragments API generates Rosetta fragment libraries based on an input sequence.
Command Line Interface
Examples
Generate fragment libraries for a sequence
lev engine submit make-fragments \
--sequence SECVENGGFCPDPEKMGDWCCGRCIRNECRNG
Flags
--sequence
(str) (Required)- Input sequence to generate fragment libraries for
Python Interface
Examples
Generate fragment libraries for a sequence
from engine import EngineClient
client = EngineClient()
client.authorize()
job_id = client.submit_make_fragments(
sequence="SECVENGGFCPDPEKMGDWCCGRCIRNECRNG"
)
Flags
sequence
(str) (Required)- Input sequence to generate fragment libraries for
Outputs
3mers.tgz
- library of 3mer fragments
9mers.tgz
- library of 9mer fragments
pssm.tgz
- PSSM produced during fragment generation
sequence-profile.tgz
- BLAST
.chk
checkpoint file produced during fragment generation
- BLAST