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Bench
Introduction
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Getting Started
Tutorial 1
Tutorial 2
Tutorial 3
Tutorial 4
Homology Modeling Tutorial
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Design Tools
Ligand Position Restraint
Loop Rebuild
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thermoMPNN
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Small Molecules
Structure Loader
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Superpose
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Full Length Antibody HM
Antibody HM
Homology Modeling
Workflows
Additional Workflows
Create a PSSM
Create Mutation List for Design from DDG Results
Create Point Mutations Quickly
Creating a PDB containing a subregion from another PDB
Design a Protein to Affect Affinity to B-Cell Antibodies
Designing Bispecific Antibodies
Designing Stability and Solubility using a PSSM
Homology Modeling - Structure Quality Guide
How to Run DDG
How to Set Up a Design in CAD
Multiple (N) Point Mutation DDG
Selecting interface residues using Pymol
Sorting Design Sequence
Using DDG for Protein-Protein Interface
Using HM with Design for Backbone Structure Re-Design
Very Close Variant Modeling
Videos
Introduction to Bench (Video)
Bench Training Part One-Structure Loader
Bench Training Part Two-Structure Viewer and Selector
Quick Overview of Bench Tools (Video)
Modeling a Homodimer using a Monomer Created in HM (video)
Organizing Design Sequences with Geneious
Relax
Creating a PDB containing a subregion
Createing a PDB copntaining a subregion from another PDB
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